GertzLab

A place for Gertz Lab memebers and anyone else who finds their way here to get up to date on scientific and computational procedures we commonly use in our lab.

Rsnapshot Backup
Rsnapshot Backup
Submitting jobs to CHPC from HCI servers
Submitting jobs to CHPC from HCI servers
TCGA Mutant Analysis
TCGA Mutant Analysis
Getting Raw Data From GEO
Getting Raw Data From GEO
Advanced Awk Example 1: Parsing a Great Gene Region Association File
Advanced Awk Example 1: Parsing a Great Gene Region Association File
Introduction To Awk
Introduction To Awk
4 Incucyte Create Processing Definitions
4 Incucyte Create Processing Definitions
3 Incucyte Retrieve Scan Data
3 Incucyte Retrieve Scan Data
2 Incucyte Archiving Scans
2 Incucyte Archiving Scans
1 Incucyte Schedule Scans
1 Incucyte Schedule Scans
HiC Data
HiC Data
Building Docker Pipelines and Singularity
Building Docker Pipelines and Singularity
Why Use Docker? An intro
Why Use Docker? An intro
Making Scatter Plots with ggplot2
Making Scatter Plots with ggplot2
ChIP Pipeline Addendum
ChIP Pipeline Addendum
Using If Statments in Bash
Using If Statments in Bash
How To Make A PCA Plot In R
How To Make A PCA Plot In R
Quickly change ggplot to plotly plot
Quickly change ggplot to plotly plot
R Data Structures
R Data Structures
PCA Gene Analysis with R
PCA Gene Analysis with R
Bash Scripting a ChIP Pipeline
Bash Scripting a ChIP Pipeline