Bus Runs Like GARBAGE after Engine Swap?? (Ford E450 V10)

We're at a local BUS DEPOT today in Ithaca, NY!

The shop manager tells me that they have had some bad luck with replacement dealer-installed Ford V10 engines.
3 buses have had engines replaced within a month, and they are ALL not running right! He wants a second opinion, so he can proceed with warranty claims.

Let's start with bus #189 that runs like GARBAGE and perform a thorough diagnosis.
We have to find ALL the problems and give the shop a recommendation!

PHAD PRESSURE TRANSDUCER:
http://www.pinehollowdiagnostics.com/...

IVAN'S PICO WAVEFORMS:
https://drive.google.com/drive/folder...

KINGBOLEN K10 (Updated THINKTOOL PROS) **ONLY $860 with COUPON!!**
https://www.amazon.com/dp/B0BW8B4D9Y?...

Enjoy!
Ivan