Скачать или смотреть Accelerating Genome Sequence Analysis via Efficient Hardware/Algorithm Co-Design - Damla Senol Cali

Research Summary Talk by Damla Senol Cali (https://damlasenolcali.github.io)
48 minutes

Talk Title: "Accelerating Genome Sequence Analysis via Efficient Hardware/Algorithm Co-Design"

Slides (pptx):
https://people.inf.ethz.ch/omutlu/pub...
https://damlasenolcali.github.io/file...

Slides (pdf):
https://people.inf.ethz.ch/omutlu/pub...
https://damlasenolcali.github.io/file...

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Related talks and lectures:

GenASM: A High-Performance, Low-Power Approximate String Matching Acceleration Framework for Genome Sequence Analysis - Damla Senol Cali - Computer Architecture Lecture (37 minutes):
   • Comp. Architecture - Lecture 9a: GenASM: A...  

Nanopore Sequencing Technology and Tools for Genome Assembly - Damla Senol Cali - AACBB 2019 Talk (21 minutes):
   • Nanopore Sequencing Technology and Tools f...  

SAFARI January 2021 Newsletter - Interview with Damla Senol Cali (SAFARI CMU PhD Student) - 15 minutes:
   • SAFARI January 2021 Newsletter - Interview...  

GenASM: Accelerating Approximate String Matching in Genomics (MICRO'20 Full Talk, Damla Senol Cali) - 20 minutes:
   • GenASM: Accelerating Approximate String Ma...  

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Related papers and source code:

"GenASM: A High-Performance, Low-Power Approximate String Matching Acceleration Framework for Genome Sequence Analysis"
Paper published and presented at MICRO’20.

Full paper:
https://people.inf.ethz.ch/omutlu/pub...

Source Code:
https://github.com/CMU-SAFARI/GenASM

More information here:
https://damlasenolcali.github.io/publ...

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"Nanopore Sequencing Technology and Tools for Genome Assembly: Computational Analysis of the Current State, Bottlenecks and Future Directions"
Paper appears in Briefings in Bioinformatics, 2018.

Paper link:
https://academic.oup.com/bib/article-...

Paper PDF:
https://arxiv.org/pdf/1711.08774.pdf

More information here:
https://damlasenolcali.github.io/publ...