Скачать или смотреть How Scientists Map Genes in 3D Spaces! | Spatial Transcriptomics

In this video, I give a simple introduction to Spatial Transcriptomics using the painting analogy 🎨 — showing why it’s important to study not just which genes are active, but also where they are expressed inside tissues.
I also walk through a quick demo using tools like Scanpy, Squidpy, Plotly and Napari for data analysis:

✅ Preprocessing the dataset
✅ PCA for dimensionality reduction
✅ Neighborhood enrichment
✅ Clustering to identify cell groups
✅ Visualizing spatial patterns

By the end, you’ll understand how spatial transcriptomics helps connect single-cell identity with tissue architecture, and why it’s such a powerful approach in biology and medicine.

Github: https://github.com/pritampanda15/Omix...

Datasets: https://www.10xgenomics.com/datasets?...

🔬 Tools mentioned: Scanpy | Squidpy | Napari
🎨 Analogy: From buckets of paint to a full painting
📊 Methods: PCA | clustering | neighborhood analysis

#SpatialTranscriptomics #SingleCell #Scanpy #Squidpy #Napari #Bioinformatics #Genomics #Transcriptomics #RNAseq #SpatialBiology

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Welcome to Omixium!

This channel is dedicated to empowering the next generation of scientists with hands-on tutorials, deep dives, and tool walkthroughs in:

🔬 Bioinformatics & Computational Biology
🧠 AI in Drug Discovery & Protein Design
⚗️ Molecular Docking, MD Simulations & Systems Biology
🧬 Single-cell RNA-seq, Multi-omics & NGS Pipelines
👨‍💻 AI Coding for Biology (Claude, Gemini, GPT)

🧪 New videos every week — for scientists, students, coders, and curious minds!

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🌐 Stay Connected:

🔗 LinkedIn: [Pritam Kumar Panda](  / pritam-kumar-panda  )
🌍 Website: [https://www.atomodyssey.com](https://www.atomodyssey.com)
📧 Contact: [[email protected]](mailto:[email protected])
💻 GitHub: [https://github.com/pritampanda15](https://github.com/pritampanda15)