Скачать или смотреть GEP | Pathways Gene Annotation Part 6.3 - Determine phases of donor and acceptor splice sites

In this video, you will learn how to identify splice sites and determine the phase of donor and acceptor splice sites using the Genome Browser.

Resources:
GEP UCSC Genome browser: https://gander.wustl.edu/cgi-bin/hgGa...
Splicing | A GEP Tutorial:    • Splicing | A GEP Tutorial  
Pathways Project – Annotation Walkthrough document: https://thegep.org/lessons/ksandlin-w...
Pathways Project – Annotation Form: https://thegep.org/lessons/pathways-p...
Pathways Project – Reference Glossary: https://thegep.org/lessons/pathways-p...

Pathways Project Walkthrough Series:
GEP | Pathways Gene Annotation Introduction:    • GEP | Pathways Gene Annotation Introduction  
GEP | Pathways Gene Annotation Part 1 - Examine genomic neighborhood surrounding target gene:    • GEP | Pathways Gene Annotation Part 1 - Ex...  
GEP | Pathways Gene Annotation Part 2.1 - Retrieve protein sequence of target gene:    • GEP | Pathways Gene Annotation Part 2.1 - ...  
GEP | Pathways Gene Annotation Part 2.2 - Perform a BLAST search of D. melanogaster protein:    • GEP | Pathways Gene Annotation Part 2.2 - ...  
GEP | Pathways Gene Annotation Part 2.3 - Summarize tblastn results:    • GEP | Pathways Gene Annotation Part 2.3 - ...  
GEP | Pathways Gene Annotation Part 3.1 - Examine evidence for a protein-coding gene:    • GEP | Pathways Gene Annotation Part 3.1 - ...  
GEP | Pathways Gene Annotation Part 3.2 - Use synteny to gather additional evidence:    • GEP | Pathways Gene Annotation Part 3.2 - ...  
GEP | Pathways Gene Annotation Part 4 - Determine target gene’s structure in D. melanogaster:    • GEP | Pathways Gene Annotation Part 4 - De...  
GEP | Pathways Gene Annotation Part 5 - Determine approximate location of CDSs in target species:    • GEP | Pathways Gene Annotation Part 5 - De...  
GEP | Pathways Gene Annotation Part 6.1 - Verify start codon coordinates:    • GEP | Pathways Gene Annotation Part 6.1 - ...  
GEP | Pathways Gene Annotation Part 6.2 - Verify stop codon coordinates:    • GEP | Pathways Gene Annotation Part 6.2 - ...  
*GEP | Pathways Gene Annotation Part 6.3 - Determine phases of donor and acceptor splice sites:    • GEP | Pathways Gene Annotation Part 6.3 - ...  
GEP | Pathways Gene Annotation Part 6.4 - Use spliced RNA-Seq reads to verify coordinates:    • GEP | Pathways Gene Annotation Part 6.4 - ...  
GEP | Pathways Gene Annotation Part 6.5 - Use splice junction predictions to verify coordinates:    • GEP | Pathways Gene Annotation Part 6.5 - ...  
GEP | Pathways Gene Annotation Part 7.1 - Verify gene model of protein:    • GEP | Pathways Gene Annotation Part 7.1 - ...  
GEP | Pathways Gene Annotation Part 7.2 - Download files required for project submission:    • GEP | Pathways Gene Annotation Part 7.2 - ...  
GEP | Pathways Gene Annotation Part 7.3 - Merge project files:    • GEP | Pathways Gene Annotation Part 7.3 - ...  
GEP | Pathways Gene Annotation Appendix A - Combining (or Batching) BLAST Searches:    • GEP | Pathways Gene Annotation Appendix A ...  

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