Скачать или смотреть Bioinformatics Running BLAST queries and performing sequence alignment with Biopython

#12daysofbiopython
In Day 4 of 12 days of Biopython video I am going to show you how to run queries against online version of BLAST. I am going to show you how to make connection to NCBI BLAST and how to query with blastn program nucleotide database. Then I am going to show you how to parse and get results of BLAST query, so how to get alignments.

Feel free to skip to chapter of your interest.
Chapters:
0:00 Intro
0:23 What is BLAST and what is used for?
0:47 Biopython Bio.Blast for BLAST operations
1:00 NCBIWWW qblast function
1:37 qblast search nucleotide database with blastn program
2:40 What is in BLAST record returned with query
3:38 Outro


You can find code/notebook connected to the topic here:
Github code:
https://github.com/lanacaldarevic/12-...

My channel is aimed at everyone interested in Computer Science applications in biology. The mission is to simplify Bioinformatics concepts, one video at a time! Stay productive!

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