Скачать или смотреть Bioinformatics Filtering FASTQ files by PHRED quality scores with Biopython

#12daysofbiopython
In Day 12 of 12 days of Biopython video I am going to show you how to filter sequence data coming from FASTQ files by their PHRED quality scores using Biopython SeqIO module.

Feel free to skip to chapter of your interest.
Chapters:
0:00 Intro
0:42 Get sample FASTQ file
0:55 Parsing FASTQ file to get the number of sequences
1:19 Accessing phred quality scores using .letter_annotations
1:45 Filtering out sequences whose phred quality score is below some threshold
2:48 Outro

You can find code/notebook connected to the topic here:
Github code:
https://github.com/lanacaldarevic/12-...

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