Running a simulation of a protein in solution under windows using VMD and NAMD

Описание к видео Running a simulation of a protein in solution under windows using VMD and NAMD

Starting from a protein structure in the PDB, I demonstrate how to build a CHARMM PSF file for the protein using VMD, to add a water box, and to add ions. Then I show how you can use NAMD to run a simulation of this protein.

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