Analysis of Spatial Transcriptomics data

Analysis of Spatial Transcriptomics data | Levin Moser | October 18th, Halfway to I2K 2023

Authors: Levin Moser, Broad Institute Description: This workshop gives an introduction on how to analyze Spatial Transcriptomics data. We will go step-by-step through a basic analysis pipeline using Python and a public MERFISH dataset. These steps include data normalization, quality control, clustering, and basic visualizations.

Pre-Workshop Instructions: We will provide a Google Colab link for you to follow the steps without the need of installing anything.
If you would like to follow the analysis step-by-step on your own laptop or PC, please have a working conda/python installation ready.

Keywords: Spatial Transcriptomics, MERFISH, Python, Jupyter, ScanPy