Comparing single-cell RNA integration methods | Which is the best?

Описание к видео Comparing single-cell RNA integration methods | Which is the best?

Which single-cell integration method is the best? In this video I compare 5 different methods using 3 different challenging integration problems. I test Seurat CCA, Seurat RPCA, SCVI-tools, and Scanorama. I measure time and memory usage and also examine integration outcomes.

Github:
https://github.com/mousepixels/sanbom...

Datasets:
https://www.cell.com/cell/fulltext/S0...
https://www.nature.com/articles/s4159...
muscle/lung: unpublished

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