Bacterial Genome Sequence Annotation with PROKKA | genome annotation in bioinformatics

Описание к видео Bacterial Genome Sequence Annotation with PROKKA | genome annotation in bioinformatics

This tutorial shows you how to perform genome annotation using the bioinformatics tool prokka
Run prokka on multiple samples:  / bash-script-for-87414661  

Get more bioinformatics tutorials on Patreon
  / bigdataanalytics  

One-on-One coaching (Video Conferencing)
https://calendly.com/bioinformaticscoach

One-on-One coaching(Audio Call)
https://clarity.fm/vincentappiah

Support my work
https://www.buymeacoffee.com/informat...
https://www.paypal.com/paypalme/thein...
  / bigdataanalytics  

Subscribe to my channels
Bioinformatics:    / @bioinformaticscoach  
Data Science:    / @datasciencecoach  
Short Clips:    / @bioinformaticsclips  

Reach out
[email protected]


Download the example sequence
https://www.ncbi.nlm.nih.gov/nuccore/...

How to install Anaconda in a linux environment
   • Install , Configure and Run Anaconda ...  

How to setup linux in a windows PC
   • Quickly Install and use Linux in Windows  
How to read fasta files using python:
single sequence fasta files:    • Read FASTA files with Python for Bioi...  
multi-fasta files:    • Read FASTA files with Python for Bioi...  
How to read genbank files
   • How to read Genbank Files |   BioPyth...  
How to count features in genbank files
   • Reading GenBank Files and Count featu...  


Prokka github page: https://github.com/tseemann/prokka

How to visualize bacterial genomes using artemis:    • Genome Visualization using Artemis (D...  

Book a Session
https://clarity.fm/vincentappiah
Reach out
[email protected]


Sections of this video
00:00 Introduction
00:57 PC requirement
02:15 Install Prokka
02:19 Add conda channels
03:19 Create an environment and install prokka in it
06:09 Activate the prokka environment
07:28 Download the input data
11:13 Annotate the data using prokka
15:56 Explore the output files


Genome annotation tutorial with PROKKA | Bacterial Genome Annotation

PROKKA Tutorial-A bioinformatics tutorial on genome annotation of bacterial genomes
A bioinformatics tutorial on Bacterial Whole Genome Sequence Analysis Annotation with PROKKA


#bioinformatics #bioinformática #bioinformaticsforbeginners #genome #genomesequencing #genomics #linuxforbeginners #genomics
prokka genome annotation
prokka tutorial

Комментарии

Информация по комментариям в разработке