Скачать или смотреть Can Alkan | Acceleration of bioinformatics workloads | CGSI 2025

Can Alkan | Acceleration of bioinformatics workloads | CGSI 2025
Related Papers:

1- Alser, M., Shahroodi, T., Gómez-Luna, J., Alkan, C., & Mutlu, O. (2020). SneakySnake: A fast and accurate universal genome pre-alignment filter for CPUs, GPUs, and FPGAs. Bioinformatics, 36(22–23), 5282–5290.

2- Senol Cali, D., Kalsi, G. S., Bingöl, Z., Firtina, C., Subramanian, L., Kim, J. S., Ausavarungnirun, R., Alser, M., Gómez-Luna, J., Boroumand, A., Nori, A., Scibisz, A., Subramoney, S., Alkan, C., Ghose, S., & Mutlu, O. (2020). GenASM: A low-power, memory-efficient approximate string matching acceleration framework for genome sequence analysis. In Proceedings of the 53rd IEEE/ACM International Symposium on Microarchitecture (MICRO 2020). Association for Computing Machinery.

3- Alser, M., Bingöl, Z., Senol Cali, D., Kim, J., Ghose, S., Alkan, C., & Mutlu, O. (2020). Accelerating genome analysis: A primer on an ongoing journey. IEEE Micro, 40(5), 65–75.

4- Senol Cali, D., Kanellopoulos, K., Lindegger, J., Bingöl, Z., Kalsi, G. S., Zuo, Z., Firtina, C., Cavlak, M. B., Kim, J., Mansouri Ghiasi, N., Singh, G., Gómez-Luna, J., Alserr, N. A., Alser, M., Subramoney, S., Alkan, C., Ghose, S., & Mutlu, O. (2022). SeGraM: A universal hardware accelerator for genomic sequence-to-graph and sequence-to-sequence mapping. In Proceedings of the 49th Annual International Symposium on Computer Architecture (ISCA 2022) (pp. 638–655). ACM.