CellProfiler Introduction

A first introduction into BioImage Analysis using CellProfiler.
Material: https://github.com/ahklemm/CellProfil...
4:48 Cellprofiler interface and first steps
15:51 Getting outlines of the nuclei: IdentifyPrimaryObjects
22:20 IdentifyPrimaryObjects: Which steps would you need to do in Fiji?
24:08 IdentifyPrimaryObjects: Advanced settings
35:48 IdentifyPrimaryObjects: Final settings
37:20 Getting the outlines of the nuclear membrane
38:18 Measuring intensities and calculating the intensity ratio
44:33 Exporting the measurements to a spreadsheet
45:49 Creating a control image
53:40 Executing the workflow on all images
54:39 CellProfiler output
59:18 Getting the outlines of the cells
1:05:47 Getting the outlines of the cytoplasm
1:07:13 Final steps of the workflow
1:08:28 General considerations