How to compute LD with PLINK | Genomics

This video shows the practical computation of #LD with #PLINK in three parts:
1) general options to calculate #LD using #PLINK
2) visualization of LD decay (using #tidyverse)
3) an example of LD pruning

#genetics #genomics #linkage

The R script is here: https://pastebin.com/FMdqpiEJ
Data from the WIDDE database (see the sheep and cattle tabs on top of the website): http://widde.toulouse.inra.fr/widde/


Thumbnail picture credit: https://www.pexels.com/de-de/foto/arb...

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