Скачать или смотреть FIJI ImageJ Measuring the length of an object via geodesic diameter Normic2022

Minimal example of calculating the length of an object via segmentation, morphological operations and geodesic diameters.

You must have an updated FIJI installation and also install the CMCI-EMBL plugin
Help ➝ Update ➝ Manage update sites ➝ CMCI-EMBL ➝ Close ➝ Apply Changes
and the IJPB-plugin (MorpholibJ)
Help ➝ Update ➝ Manage update sites ➝ IJPB-plugins ➝ Close ➝ Apply Changes

Note if your final centre lines are "wavy" and thus you get very long distance measurements, then you can use the Edit ➝ Selection ➝ Interpolate function to smooth out your line ROIs

This is an example workflow used during the 9th NorMIC Workshop on Microscopy Image Processing: https://www.med.uio.no/ncmm/english/news-a...

For the material used for the 2h sessions please go to:
https://github.com/CamachoDejay/Teaching-I...