Read Trimming and Filtering Tutorial | Cutadapt Tutorial

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How to install
conda
linux:    • Install , Configure and Run Anaconda ...  
   • How I install and configure Anaconda ...  
macos:    • Install, Configure and Run Anaconda i...  

mamba:   • Install , Configure  and Run Mamba & ...  
micromamba

Download the example data here:https://training.galaxyproject.org/tr...

Original Tutorial : https://training.galaxyproject.org/tr...
Cutadapt installation instructions : https://cutadapt.readthedocs.io/en/st...
Cutadapt user guide: https://www-users.york.ac.uk/~dj757/p...
Useful cutadapt tutorial:https://www-users.york.ac.uk/~dj757/p...

Additional Videos
RNA Seq Mapping with STAR
Commandline:    • RNA Seq Analysis | Mapping Genome Rea...  
Galaxy:    • RNA Seq Galaxy Tutorial for Bioinform...  


Chapters
00:00 Intro
02:33 PC Requirement
06:55 Install Cutadapt
11:01 Download the example data
16:41 Define input and output files
20:17 Trim and filter reads using cutadapt
24:51 Save cutadapt summary to an output file
28:31 Explore the output files


Paired-End Read Trimming and Filtering using Cutadapt Tutorial | Paired End Reads





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