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CGEM-SCHISM testing

CDOM: Colored Dissolved Organic Matter (ppb)

Model run:
St. Andrew's Bay, Florida.
Hourly outputs from January 1, 2019 to June 19, 2019
Values from SCHISM-plugin-generated surface and 'near bottom' values of the CGEM state variables.

Note:
This is not a production model. The primary purpose of the videos is to share the results of the working draft of CGEM (Coastal General Ecology Model) in preliminary efforts to incorporate CGEM with SCHISM(Semi-implicit Cross-scale Hydroscience Integrated System Model).

Use caution with any interpretation of results: the colormap range is not fixed, rather it is automatically set to the min/max range at that timestep.

CGEM-SCHISM (draft) code:
https://github.com/oybcst/schism/tree...

USEPA CGEM information and code:
https://www.epa.gov/ceam/coastal-gene...
https://github.com/USEPA/CGEM

Input parameters and additional run information:
https://github.com/oybcst/CGEM

Credits:

CGEM model run and visualizations by Lisa L. Lowe.

The hydrodynamics model, which uses SCHISM with LSC2 hybrid coordinates, by Zhilong Liu.

The hydrodynamics modeling and CGEM development work is a component of research funded by the National Oceanic and Atmospheric Administration's RESTORE Science Program under award NA19NOS4510194 to University of South Alabama and North Carolina State University.

The modeling is done on Expanse, at the San Diego Supercomputer Center (SDSC) through allocation EES210015 from the Advanced Cyberinfrastructure Coordination Ecosystem: Services & Support, which is supported by National Science Foundation grants 2138259, 2138286, 2138307, 2137603, and 2138296.

VisIt is an Open Source, interactive, scalable, visualization, animation and analysis tool: https://visit.llnl.gov

SCHISM (Semi-implicit Cross-scale Hydroscience Integrated System Model) is a derivative product built from the original SELFE (v3.1dc; Zhang and Baptista 2008) and distributed with an open-source Apache v2 license, with many enhancements and upgrades including new extension to large-scale eddying regime and a seamless cross-scale capability from creek to ocean (Zhang et al. 2016).

Zhang, Y. and Baptista, A.M. (2008) SELFE: A semi-implicit Eulerian-Lagrangian finite-element model for cross-scale ocean circulation", Ocean Modelling, 21(3-4), 71-96.
Zhang, Y., Ye, F., Stanev, E.V., Grashorn, S. (2016) Seamless cross-scale modeling with SCHISM, Ocean Modelling, 102, 64-81.

SCHISM code: https://github.com/schism-dev/schism

SCHISM VisIt Plugin: https://github.com/schism-dev/schism_...