Molecular Docking Analysis | Autodock Results Analysis | Protein Ligand Int | Pymol | LigPlot Etc.,

This video give you a brief on Molecular Docking (Autodock) Results Analysis, in this we showed a tutorial how to extract various scores (Binding Free Energies, RMSD, inhibition constant (Ki) ) from Docking log file of Autodock. We also, shown how to generate 2D and 3D images using various web plot form.

Results Analysis Steps
1. Autodock Docking Log File Analysis
2. Save Best Docking Confirmation to PDBQT - In autodock
3. PDBQT to PDB - using Open Babel GUI
4. 2 D and 3D images - PLP, Protein Plus, LigPlot and Pymol

Autodock DLG file score Description:

1. Binding Energies:
https://bit.ly/397VNDt

2. Inhibition Constant:
https://bit.ly/32wfHGX

Tools:
1. Open Babael GUI : https://bit.ly/3eMgXZm
2. PLP web Server : https://bit.ly/30g07fS
3. Protein Plus Web Server: https://proteins.plus/
4. LigPlot+ : https://bit.ly/3fJ3see
5. Pymol https://pymol.org/2/

Literature :
https://link.springer.com/article/10....
https://bit.ly/3h8Uffm