Скачать или смотреть WORKSHOP: Containerising a pipeline (Part 1)

Presenter: Dr Marco de la Pierre, Pawsey Supercomputing Centre, Western Australia.

This recording of a live workshop comprises a combination of presentations by the lead trainer, guided hands-on exercises and Q&A sessions, and smaller breakout groups that were supported by experienced facilitators (breakouts not recorded).

The workshop provided a forum to explore the merits, advantages and limitations of applying containers in bioinformatics. During the workshop participants:

explored real use cases related to biology
worked together through a series of domain-specific examples
discussed tips and best practices.

REQUIREMENTS
Basic familiarity with UNIX shell concepts and command line interactions are required. Participants do not need any previous experience with containers, but you must have watched Parts 1 and 2 of the 'Using Containers in Bioinformatics' series (available here:    / australianbiocommons  . Part 1 presentations and guided hands-on tutorials build on the previous webinars.

Skip to content of interest:
Set up instructions - 5:47
Containerising a pipeline - 12:12
Setting up graphical applications - 45:10

The written materials can be found here: https://pawseysc.github.io/containers...

This page has instructions for participants to setup the computer for the tutorial: https://pawseysc.github.io/containers...

The workshop was presented by the Australian BioCommons and Pawsey Supercomputing Centre with the assistance of a network of Facilitators from around Australia and New Zealand.