Antimicrobial Resistance Genes Detection using ABRicate tutorial | Bioinformatics 101 for Beginners

This bioinformatic tutorial demonstrates the step-by-step procedure for identifying antimicrobial resistance genes in your genomes using ABRicate software.
AMR identification

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Materials
______________________________
Where to download ABRicate software
https://github.com/tseemann/abricate

Dataset can be downloaded from any of the links below
https://swift.rc.nectar.org.au:8888/v...
https://github.com/vappiah/bioinfodat...
https://github.com/vappiah/bioinfodata

How to install anaconda
Linux    • Install , Configure and Run Anaconda ...  
MacOS    • Install, Configure and Run Anaconda i...   - GUI Installer
   • Install, Configure and Run Anaconda i...   - Command line installer


Genome visualization using DNAPlotter
   • Genome Visualization using Artemis (D...  

Where to search for information about the AMR genes in NCBI
https://www.ncbi.nlm.nih.gov/gene


Chapters
00:56 What is antimicrobial resistance
01:18 Examples of antimicrobial agents
01:09 Tools for identification of AMR genes
02:28 Lab Session
02:28 PC Requirement
03:03 Add conda channels
04:00 Create environment and install ABRicate software
05:54 Activate conda environment
06:23 Download example data
07:10 Set working directory
07:31 Test ABRicate software
08:42 Run ABRicate on the data
10:41 View and interpretation of output
15:36 Obtain additional information about the hit genes in NCBI database



Antibiotic resistance detection | Abricate tutorial | How to identify Antimicrobial Resistance Genes


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