Introduction to QuPath

Introduction to QuPath by Mike Nelson, covering the major concepts and tools in QuPath and demonstrating a quick project (don’t worry, each step will be shown slower in later videos).

Files https://drive.google.com/drive/folder... and a related presentation https://docs.google.com/presentation/... are available for download.

0:00 Welcome by Zbigniew Mikulski
3:10 Digital Pathology Workshop
5:11 Introduction to QuPath by Mike Nelson
10:26 How does image analysis work?
12:27 Follow along with a quick project
17:17 QuPath interface
21:35 Overview of My First Project + Tissue Outline
28:57 Cell Detection
32:56 Cell Classification
34:28 Repeat all steps
38:56 Workflow to Script for batching
43:41 Recap
47:27 What is a project
48:23 Objects and Hierarchy
55:02 QuPath Preferences
59:40 Analysis pane

Please follow this document to get everything you need to fully participate in this training course (software, files, cheat sheets, and additional resources):
https://docs.google.com/document/d/1V...

If you have any questions about the videos or the training course, please ask on this image.sc forum post. https://forum.image.sc/t/qupath-train...
The more information you can include about your question, the more helpful our answers can be.