Скачать или смотреть GBCC2025 Parallel Sessions 2B

Galaxy and Bioconductor Community Conference 2025
Session 2B

“Robust ancestry inference from challenging human molecular data with RAIDS”
Pascal Belleau, Xintong Li, Astrid Deschênes, Laine Marrah, David A. Tuveson, Alex Krasnitz.

“Meta-iPep—A metaimmunopeptidomics pipeline implemented within Galaxy platform to characterize HLA-bound microbial peptides for immunotherapy”
Katherine T. Do, Subina Mehta, Reid Wagner, Fengchao Yu, Alexey Nesvizhskii, Timothy J. Griffin, Pratik D. Jagtap.

“Analyzing allele-specific methylation using Oxford Nanopore long-read DNA sequencing”
Kasper D. Hansen.

“Public gene expression cancer signatures across bulk, single-cell and spatial transcriptomics data with signifinder Bioconductor package”
Stefania Pirrotta, Laura Masatti, Anna Bortolato, Anna Corrà, Fabiola Pedrini, Martina Aere, Giovanni Esposito, Paolo Martini, Davide Risso, Chiara Romualdi, Enrica Calura.

“Host cell signaling during viral infection network perturbation analysis”
Pariksheet Nanda, Jason E. Shoemaker.

“SEMplR—An R package for predicting the effects of genetic variation on transcription factor binding”
Grace E. Kenney, Rintsen N. Sherpa, Alan P. Boyle, Douglas H. Phanstiel.

“Enhancing rare variant analysis in biobanks—Whole-genome annotation using GDS files”
Xiuwen Zheng, Raven Chen.

“Orthology detection at the scale of modern genomics”
Aidan H. Lakshman, Erik S. Wright.

“Multiscale analysis of lung adenocarcinoma spatial transcriptomics data”
Lambda Moses, Bianca Dumitrascu.

“Deciphering CLEC12A negative regulation of neutrophil activation by network and functional enrichment analyses”
Pascal Belleau, Astrid Deschênes, Guillaume Paré, David Sykes, Michael Mansour, Matheus Jantsch, Fidan Demir, Ken McKleish, Robert Faure, Maria J. Fernandes.

“Broadening metagenomic horizons in Galaxy—Introducing the HiFi-MAG Pipeline, new profilers, and insights from BioDIGS”
Tyler Collins, Alex Ostrovsky, Michael Schatz.

“Visualizing and analyzing differential transcript usage”
Beatriz Campillo, Michael Love.