Yale NLP/LLM Interest Group - Session 8 Fongci Lin

Speaker Bio:

Dr. Fongci Lin is an Associate Research Scientist at the Section of Biomedical Informatics and Data Science, School of Medicine, Yale University. With a profound passion for harnessing the power of natural language processing, Dr. Lin's research is at the forefront of applying cutting-edge NLP techniques to revolutionize the field of medicine. His work aims to bridge the gap between advanced computational methods and practical medical applications, enhancing healthcare delivery and medical research through innovative data-driven solutions.

Title of Talk: Kamino: A Scalable Architecture to Support Medical AI Research Using Large Real-World Data

Electronic Health Records (EHRs) represent a crucial data source for real-world evidence generation. To facilitate biomedical studies using EHRs, standard data models like the OMOP CDM have been developed. Nevertheless, recent advancements in biomedical AI research that leverage EHRs have introduced new challenges, encompassing security considerations, large-scale data retrieval, and computational resource management, including GPUs. This paper introduces Kamino, an innovative architectural solution tailored to support biomedical AI research using EHR data. Kamino offers a user-friendly interface with features designed for efficient team access management in accordance with regulatory requirements. It facilitates direct data retrieval from an OMOP CDM instance and includes are source allocation system based on Kubernetes orchestration. Here, we demonstrate the practical application and utility of Kamino through a clinical natural language processing task. We firmly believe that such a tool will significantly expedite AI research conducted with EHR data within academic institutions.