Resting-State Functional Connectivity in AFNI

Start-to-finish tutorial of functional connectivity in AFNI. Hit the "Show More" button for links and chapter timings!

Link to dataset used in this tutorial: https://openfmri.org/dataset/ds000172/

Link to blog post: http://andysbrainblog.blogspot.com/20...

Table of Contents
0:00 Introduction
0:16 Overview of Functional Connectivity
1:28 Getting started with the dataset: Locating files, looking at timecourses
3:05 Using uber_subject.py to preprocess the data
6:26 Modeling out motion, high and low frequencies, and other sources of noise with 3dTproject
9:09 Examining the design matrix X.jpg
11:34 Selecting and creating a mask for functional connectivity
14:56 Creating a correlation map with 3dfim+
16:30 Transforming r values to z-scores
17:45 Ending