Single-cell pseudotime and gene regulatory analysis with CellOracle

Описание к видео Single-cell pseudotime and gene regulatory analysis with CellOracle

CellOracle is a powerful suite of tools that can perform pseudotime analysis, gene regulatory network analysis, and in silico perturbation analysis on single-cell data in python. This is a simple tutorial covering the basics of CellOracle while analyzing a developmental pancreas dataset.

Notebook:
https://github.com/mousepixels/sanbom...

Reference:
https://www.nature.com/articles/s4158...


0:00 Intro
1:07 Prepare
4:15 Pseudotime
8:56 Regulatory
14:20 Perturbation
20:22 Conclusions

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